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Schema
Citing CMDGA
Clear Filters
Assay category
2
DNA binding
Assay
2
ChIP-seq
Project
2
AMP
RFA
2
AMP
Experiment status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Target of assay
2
histone
2
histone modification
1
RNA binding protein
1
broad histone mark
narrow histone mark
1
transcription factor
Biosample type
2
tissue
Organ
2
pancreas
Life stage
2
unknown
Available data
2
bam
2
bed bed3+
2
bigWig
2
fastq
Platform
95
Illumina HiSeq 2000
24
Illumina HiSeq 4000
8
Illumina Genome Analyzer
8
Illumina NextSeq 500
5
Illumina Genome Analyzer II
2
Illumina Genome Analyzer IIx
2
Illumina HiSeq 2500
1
Illumina Genome Analyzer I
Run type
2
single-ended
Read length (nt)
2
51
1
36
Library made from
2
DNA
Date released
2
August, 2017
Lab
2
AMP-T2D consortium
Replication type
2
anisogenic
Audit category:
2
missing controlled_by
assay_title!
CRISPRi RNA-seq
siRNA RNA-seq
target.investigated_as!
narrow histone mark
Showing 2 of 2 results
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Experiment
TSTSR352275
released
Audit not_compliant
1
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (38 years) and male (59 years) and male (70 years)
Target:
H3K4me1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR774103
released
Audit not_compliant
1
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (38 years) and male (62 years) and male (63 years)
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP