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Assay category
169
Transcription
145
DNA binding
22
DNA accessibility
4
DNA methylation
Assay
167
total RNA-seq
145
ChIP-seq
20
ATAC-seq
3
WGBS
2
DNase-seq
Hi-C
1
RRBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
Project
341
AMP
RFA
341
AMP
Experiment status
341
released
Genome assembly (visualization)
254
hg19
225
GRCh38
Organism
341
Homo sapiens
Target of assay
65
histone modification
64
histone
43
control
42
narrow histone mark
37
transcription factor
22
broad histone mark
2
chromatin remodeller
1
RNA binding protein
Biosample type
341
tissue
Organ
341
liver
Life stage
210
unknown
85
adult
40
child
10
embryonic
Available data
272
bam
252
bigWig
149
tsv
104
bed narrowPeak
71
fastq
70
tagAlign
40
bigBed narrowPeak
5
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
Platform
51
Illumina HiSeq 2000
7
MiSeq
4
Illumina Genome Analyzer IIx
3
Illumina HiSeq 2500
2
Applied Biosystems SOLiD System 3 Plus
2
Illumina Genome Analyzer
2
Illumina Genome Analyzer II
1
Illumina HiSeq 4000
Run type
56
single-ended
15
paired-ended
Read length (nt)
46
50
9
36
7
33
6
200
2
32
1
100
Mapped read length (nt)
5
50
2
36
Library made from
172
DNA
169
RNA
Date released
193
May, 2020
52
August, 2017
40
May, 2022
38
December, 2017
6
November, 2018
6
October, 2019
3
July, 2019
2
March, 2020
1
February, 2021
Lab
301
AMP-T2D consortium
40
Karen Mohlke, UNC
Replication type
292
unreplicated
38
isogenic
11
anisogenic
Audit category:
27
inconsistent control
Audit category:
1
inconsistent control read length
assay_title!
Hi-C
Showing 7 of 341 results
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Experiment
DSR221TGL
released
total RNA-seq
of liver
Homo sapiens
liver male adult (50 years)
Lab:
Karen Mohlke, UNC
Project:
AMP
Experiment
DSR938IIL
released
total RNA-seq
of liver
Homo sapiens
liver male child (16 years)
Lab:
Karen Mohlke, UNC
Project:
AMP
Experiment
DSR621QRL
released
total RNA-seq
of liver
Homo sapiens
liver female adult (36 years)
Lab:
Karen Mohlke, UNC
Project:
AMP
Experiment
DSR967BUK
released
total RNA-seq
of liver
Homo sapiens
liver female adult (35 years)
Lab:
Karen Mohlke, UNC
Project:
AMP
Experiment
DSR612DNL
released
total RNA-seq
of liver
Homo sapiens
liver female child (17 years)
Lab:
Karen Mohlke, UNC
Project:
AMP
Experiment
DSR542HFD
released
total RNA-seq
of liver
Homo sapiens
liver male adult (28 years)
Lab:
Karen Mohlke, UNC
Project:
AMP
Experiment
DSR057OIJ
released
ATAC-seq
of liver
Homo sapiens
liver male child (16 years)
Lab:
Karen Mohlke, UNC
Project:
AMP