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Schema
Citing CMDGA
Clear Filters
Assay category
3
DNA binding
1
DNA accessibility
1
Transcription
Assay
3
ChIP-seq
total RNA-seq
1
DNase-seq
1
pCHi-C
1
single cell RNA-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
6
Homo sapiens
Target of assay
2
transcription factor
1
RNA binding protein
1
control
Biosample type
6
tissue
Organ
6
liver
Life stage
4
adult
3
child
1
embryonic
1
unknown
Available data
4
bam
4
fastq
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
csv
1
tsv
Platform
3
Illumina Genome Analyzer IIx
1
Illumina HiSeq 2000
1
Illumina HiSeq 2500
Run type
3
single-ended
1
paired-ended
Read length (nt)
4
36
Library made from
5
DNA
1
RNA
Date released
August, 2017
3
December, 2017
1
February, 2021
1
March, 2020
1
November, 2018
Lab
6
AMP-T2D consortium
Replication type
81
unreplicated
36
isogenic
6
anisogenic
assay_title!
RRBS
total RNA-seq
month_released!
August, 2017
Showing 6 of 6 results
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Experiment
DSR534MRK
released
pCHi-C
of liver
Homo sapiens
liver
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR373SNC
released
single cell RNA-seq
of liver
Homo sapiens
liver female adult (41 year) and male adult (21 year) and male adult (26 years) and male adult (44 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR004CBL
released
DNase-seq
of liver
Homo sapiens
liver embryo (59 days) and embryo (80 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR981226
released
ChIP-seq
of liver
Homo sapiens
liver female child (6 years) and male adult (32 years)
Target:
RAD21
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR296175
released
ChIP-seq
of liver
Homo sapiens
liver female child (6 years) and male adult (32 years)
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR485515
released
ChIP-seq
of liver
Homo sapiens
liver female child (6 years) and male adult (32 years)
Target:
rabbit-IgG-control
Lab:
AMP-T2D consortium
Project:
AMP