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Assay category
1
DNA accessibility
1
DNA binding
Assay
1
ChIP-seq
1
FAIRE-seq
Project
2
AMP
RFA
2
AMP
Experiment status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Biosample type
1
cell line
1
tissue
Organ
1
liver
1
pancreas
Life stage
1
child
1
unknown
Available data
2
bam
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
2
fastq
1
bed broadPeak
1
bigBed broadPeak
Platform
524
Illumina HiSeq 2000
171
Illumina NovaSeq 6000
155
Illumina HiSeq 2500
150
Illumina HiSeq 4000
136
Illumina Genome Analyzer IIx
93
Illumina Genome Analyzer
38
HiSeq HighOutput V4
24
Illumina NextSeq 500
22
Illumina Genome Analyzer II
16
Illumina Genome Analyzer IIe
7
MiSeq
4
HiSeq 1500
2
Applied Biosystems SOLiD System 3 Plus
2
Illumina Genome Analyzer I
Run type
2
single-ended
Read length (nt)
1
35
1
36
Library made from
2
DNA
Date released
1
August, 2017
1
November, 2017
Lab
2
AMP-T2D consortium
Replication type
anisogenic
1
isogenic
1
unreplicated
assay_title!
WGBS
files.file_type!
bedpe bed3+
replication_type!
anisogenic
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Experiment
TSTSR580557
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR121227
released
FAIRE-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP