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Assay category
1918
Transcription
1871
DNA binding
833
DNA accessibility
34
3D chromatin structure
22
DNA methylation
1
DNA sequencing
Assay
1871
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
85
snATAC-seq
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
4265
AMP
277
HPAP
244
T1D
47
KPMP
19
LungMap
4
community
1
ITG
RFA
4076
AMP
277
HPAP
244
T1D
189
AMP2
47
KPMP
19
LungMap2
4
community
1
ITG
Experiment status
4856
released
1
archived
Genome assembly (visualization)
3213
hg19
3111
GRCh38
5
hg18
Organism
4841
Homo sapiens
Target of assay
1017
histone modification
1016
histone
514
narrow histone mark
514
transcription factor
501
broad histone mark
343
control
114
RNA binding protein
89
recombinant protein
36
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Biosample type
2751
tissue
1041
primary cell
661
cell line
394
in vitro differentiated cells
10
stem cell
Organ
895
pancreas
786
liver
678
connective tissue
485
adipose tissue
477
epithelium
385
heart
354
kidney
286
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Life stage
2874
adult
935
unknown
532
child
466
embryonic
51
newborn
Available data
3374
bam
3152
bigWig
1817
bed narrowPeak
1595
tsv
1341
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
274
bed bed3+
161
txt
112
zippedFastqFolder
64
xls
23
bedpe bed3+
23
hic
19
bed bedMethyl
19
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tbi
1
vcf
Platform
562
Illumina HiSeq 2000
182
Illumina HiSeq 2500
171
Illumina NovaSeq 6000
152
Illumina HiSeq 4000
142
Illumina Genome Analyzer IIx
106
Illumina Genome Analyzer
60
Illumina NextSeq 500
38
HiSeq HighOutput V4
26
Illumina Genome Analyzer II
16
Illumina Genome Analyzer IIe
8
HiSeq 1500
7
MiSeq
3
Illumina Genome Analyzer I
2
Applied Biosystems SOLiD System 3 Plus
Run type
920
single-ended
537
paired-ended
61
unknown
Read length (nt)
264
36
224
100
210
101
206
50
204
76
91
51
61
8
59
75
51
40
33
90
27
43
23
98
22
49
20
16
20
28
15
26
14
27
14
102
11
25
10
35
10
91
8
41
7
24
7
33
6
200
5
32
4
44
4
61
4
94
3
67
2
37
2
38
2
70
2
74
2
97
2
150
1
20
1
30
1
69
1
72
1
99
1
105
1
110
1
125
1
140
1
147
Mapped read length (nt)
5
50
4
36
2
51
Library insert size (nt)
112
>200
41
>100
15
225-275
1
150-250
1
>150
Library made from
2894
DNA
1947
RNA
Date released
709
February, 2021
406
November, 2017
402
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
96
July, 2019
94
December, 2017
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
July, 2025
Lab
3884
AMP-T2D consortium
343
Kyle Gaulton, UCSD
277
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Stephen Parker, UMich
1
ITG
1
Maike Sander, UCSD
Replication type
3386
unreplicated
814
isogenic
657
anisogenic
Audit category:
353
inconsistent ontology term
42
audit script error
28
inconsistent control
1
inconsistent replicate
Audit category:
89
missing controlled_by
Audit category:
56
inconsistent control read length
9
inconsistent control run_type
4
inconsistent assembly
assay_title!
WGBS
type!!
Software
Showing 8 of 4857 results
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Experiment
DSR934CIK
released
single cell RNA-seq
of kidney
Homo sapiens
kidney male adult (39 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR010DON
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (41 year)
Lab:
KPMP
Project:
KPMP
Experiment
DSR273QSL
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (35 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR157MBJ
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (53 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR345JBQ
released
single cell RNA-seq
of kidney
Homo sapiens
kidney male adult (66 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR694WFN
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (42 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR817LLE
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (53 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR217CRD
released
single cell RNA-seq
of kidney
Homo sapiens
kidney male adult (59 years)
Lab:
KPMP
Project:
KPMP