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Assay category
3
DNA binding
2
Transcription
Assay
pCHi-C
3
ChIP-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
GRO-seq
Project
4
AMP
2
community
RFA
4
AMP
2
community
Experiment status
6
released
Genome assembly (visualization)
3
GRCh38
3
hg19
1
hg18
Organism
4
Homo sapiens
Target of assay
2
histone
2
histone modification
1
broad histone mark
1
control
1
narrow histone mark
Biosample type
2752
tissue
1071
primary cell
656
cell line
389
in vitro differentiated cells
6
stem cell
Life stage
4
unknown
Available data
4
fastq
3
bam
3
bed bed3+
3
bigWig
2
bed narrowPeak
Platform
4
Illumina HiSeq 2500
Run type
4
single-ended
Read length (nt)
3
50
2
36
Library made from
4
DNA
Date released
3
December, 2017
2
March, 2023
1
January, 2018
Lab
4
AMP-T2D consortium
2
Anna Gloyn, Oxford
Replication type
3
isogenic
3
unreplicated
Audit category:
2
inconsistent control read length
assay_title!
pCHi-C
Showing 6 of 6 results
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Experiment
DSR694EST
released
CRISPR RNA-seq
of SB Ad3.1
Lab:
Anna Gloyn, Oxford
Project:
community
Experiment
DSR904DAB
released
CRISPRi RNA-seq
of SB Ad3.1
Lab:
Anna Gloyn, Oxford
Project:
community
Experiment
TSTSR770475
released
GRO-seq
of hESC
Homo sapiens
hESC (embryoid body cell)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR923383
released
Audit warning
1
ChIP-seq
of hESC
Homo sapiens
hESC (embryoid body cell)
Target:
H3K4me1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR015572
released
Audit warning
1
ChIP-seq
of hESC
Homo sapiens
hESC (embryoid body cell)
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR481230
released
ChIP-seq
of hESC
Homo sapiens
hESC (embryoid body cell)
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP