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Assay category
1158
Transcription
1105
DNA binding
498
DNA accessibility
57
DNA methylation
24
3D chromatin structure
1
DNA sequencing
Assay
1105
ChIP-seq
926
total RNA-seq
330
ATAC-seq
216
single cell RNA-seq
114
DNase-seq
60
RNA microarray
50
snATAC-seq
41
WGBS
pCHi-C
24
Hi-C
16
RRBS
13
small RNA-seq
4
FAIRE-seq
3
Capture-C
3
snDrop-seq
2
CRISPR genome editing followed by DNA sequencing
2
GRO-seq
2
MeRIP-seq
2
STARR-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
HiChIP
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
2556
AMP
189
HPAP
133
T1D
29
KPMP
9
LungMap
3
community
1
ITG
RFA
2437
AMP
189
HPAP
133
T1D
119
AMP2
29
KPMP
9
LungMap2
3
community
1
ITG
Experiment status
2920
released
Genome assembly (visualization)
1926
hg19
1875
GRCh38
2
hg18
Organism
2909
Homo sapiens
Target of assay
603
histone modification
602
histone
307
narrow histone mark
295
transcription factor
294
broad histone mark
207
control
72
RNA binding protein
58
recombinant protein
23
chromatin remodeller
4
other context
4
other post-translational modification
1
nucleotide modification
Biosample type
1647
tissue
655
primary cell
371
cell line
243
in vitro differentiated cells
4
stem cell
Organ
553
pancreas
460
liver
414
connective tissue
291
adipose tissue
278
epithelium
227
heart
213
kidney
177
brain
142
vasculature
139
blood vessel
106
bone element
79
artery
70
limb
59
musculature of body
39
blood
39
bodily fluid
32
eye
24
nerve
21
embryo
18
vein
12
skeleton
12
spleen
12
ureter
9
lung
2
pericardium
1
gonad
1
lymph node
1
ovary
1
skin of body
1
spinal cord
Life stage
1750
adult
542
unknown
316
child
280
embryonic
32
newborn
Available data
2023
bam
1883
bigWig
1066
bed narrowPeak
946
tsv
803
fastq
608
bigBed narrowPeak
230
tagAlign
180
bed broadPeak
162
bigBed broadPeak
157
bed bed3+
103
txt
59
zippedFastqFolder
39
xls
21
bed bedMethyl
21
bigBed bedMethyl
18
hic
17
bedpe bed3+
6
bed bedgraph
5
bed bed3
5
csv
4
tar
3
cool
3
hdf5
1
tbi
1
vcf
Platform
337
Illumina HiSeq 2000
102
Illumina HiSeq 2500
99
Illumina NovaSeq 6000
93
Illumina Genome Analyzer IIx
87
Illumina HiSeq 4000
60
Illumina Genome Analyzer
34
Illumina NextSeq 500
19
HiSeq HighOutput V4
17
Illumina Genome Analyzer II
12
Illumina Genome Analyzer IIe
5
HiSeq 1500
4
MiSeq
3
Illumina HiSeq X Ten
2
Illumina Genome Analyzer I
Run type
553
single-ended
309
paired-ended
44
unknown
Read length (nt)
161
36
125
76
122
101
120
50
120
100
50
51
44
8
35
40
32
75
20
43
20
98
19
90
16
49
14
28
13
26
12
16
9
35
9
102
6
25
6
91
5
24
4
33
4
41
4
44
4
61
3
27
3
32
3
94
3
151
2
37
2
67
1
20
1
38
1
70
1
72
1
74
1
97
1
105
1
125
1
150
1
200
Mapped read length (nt)
3
36
3
50
1
51
Library insert size (nt)
65
>200
29
>100
7
225-275
1
>150
Library made from
1734
DNA
1175
RNA
Date released
445
February, 2021
250
August, 2017
233
November, 2017
217
May, 2020
217
May, 2021
191
October, 2019
186
August, 2021
128
February, 2023
123
June, 2019
112
May, 2022
99
July, 2018
75
May, 2019
68
July, 2019
56
November, 2018
54
December, 2017
48
April, 2019
42
September, 2018
41
October, 2018
37
September, 2020
36
November, 2019
29
September, 2023
26
February, 2018
25
May, 2024
23
April, 2018
22
March, 2020
17
December, 2018
17
January, 2019
16
February, 2020
15
October, 2017
14
May, 2023
10
January, 2021
9
April, 2020
6
September, 2017
5
November, 2020
4
August, 2020
4
December, 2019
4
March, 2023
4
October, 2022
3
January, 2018
3
June, 2018
2
August, 2018
2
March, 2019
1
August, 2022
1
July, 2025
Lab
2332
AMP-T2D consortium
189
Klaus Kaestner, Upenn
185
Kyle Gaulton, UCSD
89
Katalin Susztak, Upenn
29
KPMP
25
Karen Mohlke, UNC
25
Patrick T. Ellinor, Broad
23
Bing Ren, UCSD
9
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
3
Anna Gloyn, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
2
Stephen Parker, UMich
1
ITG
1
Mark McCarthy, Oxford
Replication type
2032
unreplicated
495
isogenic
393
anisogenic
Audit category:
214
inconsistent ontology term
29
audit script error
17
inconsistent control
Audit category:
53
missing controlled_by
Audit category:
36
inconsistent control read length
4
inconsistent control run_type
2
inconsistent assembly
assay_title!
pCHi-C
type!!
Experiment
Showing 7 of 2920 results
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Experiment
DSR546LXA
released
single cell RNA-seq
of kidney
Homo sapiens
kidney male adult (56 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR555OIT
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (30 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR388TAR
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (57 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR745PGY
released
single cell RNA-seq
of kidney
Homo sapiens
kidney male adult (56 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR391TCE
released
single cell RNA-seq
of kidney
Homo sapiens
kidney male adult (63 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR368YRY
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (67 years)
Lab:
KPMP
Project:
KPMP
Experiment
DSR869QOB
released
single cell RNA-seq
of kidney
Homo sapiens
kidney female adult (71 year)
Lab:
KPMP
Project:
KPMP