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Citing CMDGA
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Assay category
3
DNA accessibility
Assay
398
total RNA-seq
61
ChIP-seq
6
WGBS
3
ATAC-seq
3
small RNA-seq
2
DNase-seq
1
RNA microarray
0
FAIRE-seq
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Organ
123
pancreas
80
epithelium
76
kidney
47
blood vessel
47
heart
47
vasculature
45
artery
28
eye
23
liver
12
bone element
12
skeleton
8
connective tissue
8
limb
5
brain
3
adipose tissue
1
blood
1
bodily fluid
1
nerve
1
pituitary gland
1
skin of body
1
spleen
1
vein
Life stage
3
adult
unknown
Available data
3
bam
3
bed narrowPeak
2
bigWig
2
fastq
1
bigBed narrowPeak
Platform
2
Illumina HiSeq 4000
Run type
2
paired-ended
Read length (nt)
2
100
Library made from
3
DNA
Date released
1
August, 2017
1
November, 2019
1
October, 2017
Lab
3
AMP-T2D consortium
Replication type
2
unreplicated
1
anisogenic
Audit category:
1
inconsistent ontology term
replicates.library.biosample.life_stage!
unknown
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Experiment
DSR985JSV
released
Audit error
1
ATAC-seq
of adipose tissue(adipose white tissue)
Homo sapiens
adipose white tissue (adipose tissue) male adult
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR914451
released
ATAC-seq
of omental fat pad
Homo sapiens
omental fat pad female adult (51 year)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR560092
released
ATAC-seq
of subcutaneous adipose tissue
Homo sapiens
subcutaneous adipose tissue female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP