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Citing CMDGA
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Assay category
3
DNA accessibility
1
3D chromatin structure
Assay
15
ChIP-seq
3
ATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Project
3
AMP
1
ITG
RFA
3
AMP
1
ITG
Experiment status
4
released
Genome assembly (visualization)
4
GRCh38
2
hg19
Organism
4
Homo sapiens
Biosample type
3
tissue
1
primary cell
Organ
pancreas
1
adipose tissue
1
brain
1
connective tissue
1
spleen
Life stage
4
adult
Available data
3
bam
3
bigWig
3
fastq
2
bed narrowPeak
1
hic
Platform
2
Illumina HiSeq 4000
1
Illumina HiSeq 2500
Run type
2
paired-ended
1
single-ended
Read length (nt)
2
100
1
50
Library made from
4
DNA
Date released
100
May, 2020
92
February, 2023
78
August, 2021
23
October, 2019
22
February, 2021
20
May, 2022
18
May, 2021
14
July, 2019
11
May, 2023
9
March, 2020
6
November, 2019
3
January, 2018
3
October, 2017
2
August, 2017
1
December, 2018
1
March, 2023
1
November, 2020
Lab
3
AMP-T2D consortium
1
ITG
Replication type
3
unreplicated
1
anisogenic
organ_slims!
pancreas
Showing 4 of 4 results
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Experiment
DSR798SDK
released
Hi-C
of chondrocytes
Homo sapiens
chondrocytes female adult (58 years) and female adult (63 years) and female adult (65 years) and female adult (73 years) and female adult (75 years) and male adult (61 year) and male adult (72 years) and male adult (75 years)
Lab:
ITG
Project:
ITG
Experiment
TSTSR656713
released
ATAC-seq
of cerebellum (Hemisphere)
Homo sapiens
cerebellum male adult (20 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR914451
released
ATAC-seq
of omental fat pad
Homo sapiens
omental fat pad female adult (51 year)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR728326
released
ATAC-seq
of spleen
Homo sapiens
spleen female adult (51 year)
Lab:
AMP-T2D consortium
Project:
AMP