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Assay category
3
Transcription
1
DNA accessibility
Assay
3
ChIP-seq
3
total RNA-seq
1
ATAC-seq
1
pCHi-C
Project
4
AMP
RFA
3
AMP
1
AMP2
Experiment status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
primary cell
Life stage
3
embryonic
1
unknown
Available data
4
bigWig
3
bam
3
tsv
2
fastq
1
bed bedgraph
1
bed narrowPeak
1
txt
Platform
2
Illumina HiSeq 2000
1
Illumina Genome Analyzer IIx
Run type
2
single-ended
Read length (nt)
2
100
1
101
Library insert size (nt)
2
225-275
Library made from
3
RNA
1
DNA
Date released
2
February, 2018
1
February, 2023
1
May, 2021
Lab
Kyle Gaulton, UCSD
3
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Replication type
2
unreplicated
1
anisogenic
1
isogenic
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Kyle Gaulton, UCSD
Showing 4 of 4 results
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Experiment
DSR470JFP
released
ATAC-seq
of embryonic stem cell
Homo sapiens
embryonic stem cell
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
Experiment
DSR213JXG
released
total RNA-seq
of embryonic stem cell
Homo sapiens
embryonic stem cell embryo (0 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR787281
released
total RNA-seq
of embryonic stem cell
Homo sapiens
embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR358715
released
total RNA-seq
of embryonic stem cell
Homo sapiens
embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP