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Citing CMDGA
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Assay category
4
DNA accessibility
Assay
296
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
DNase-seq
4
ATAC-seq
1
FAIRE-seq
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
tissue
Organ
3
epithelium
3
pancreas
1
adipose tissue
1
connective tissue
Life stage
3
adult
1
unknown
Available data
4
bam
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
4
fastq
Platform
3
Illumina NextSeq 500
1
Illumina HiSeq 4000
Run type
4
paired-ended
Read length (nt)
3
41
3
50
1
100
Library insert size (nt)
150-250
Library made from
4
DNA
Date released
103
February, 2023
100
May, 2020
77
May, 2022
76
August, 2021
34
May, 2021
26
November, 2019
22
February, 2021
22
October, 2019
14
September, 2018
11
May, 2023
8
October, 2017
7
August, 2020
6
July, 2019
5
September, 2017
4
August, 2017
4
March, 2020
3
January, 2018
3
March, 2019
3
September, 2020
1
November, 2020
Lab
4
AMP-T2D consortium
Replication type
4
unreplicated
lab.title!
Maike Sander, UCSD
replicates.library.size_range!
150-250
Showing 4 of 4 results
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Experiment
TSTSR560092
released
ATAC-seq
of subcutaneous adipose tissue
Homo sapiens
subcutaneous adipose tissue female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR318132
released
ATAC-seq
of pancreatic acinar cell
Homo sapiens
pancreatic acinar cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR066676
released
ATAC-seq
of pancreatic beta cell
Homo sapiens
pancreatic beta cell male adult (38 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR371317
released
ATAC-seq
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male adult (38 years)
Lab:
AMP-T2D consortium
Project:
AMP