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Assay category
2
DNA accessibility
Assay
1163
total RNA-seq
829
ChIP-seq
302
ATAC-seq
176
single cell RNA-seq
170
DNase-seq
87
RNA microarray
39
pCHi-C
28
snATAC-seq
23
Hi-C
17
WGBS
16
small RNA-seq
10
MeRIP-seq
8
RRBS
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
3
T1D
2
AMP
RFA
3
T1D
2
AMP
Experiment status
5
released
Genome assembly (visualization)
2
hg19
Organism
5
Homo sapiens
Biosample type
3
cell line
2
tissue
primary cell
Organ
1
brain
1
kidney
Life stage
3
unknown
2
adult
Available data
4
bam
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
fastq
Library made from
5
DNA
Date released
3
February, 2023
2
July, 2019
Lab
3
Kyle Gaulton, UCSD
2
AMP-T2D consortium
Replication type
3
isogenic
2
anisogenic
biosample_type!
primary cell
files.file_type!
fastq
month_released!
April, 2018
Showing 5 of 5 results
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Experiment
DSR991KIL
released
CRISPR genome editing followed by DNA sequencing
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR618IYM
released
CRISPR genome editing followed by DNA sequencing
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR351ZKB
released
CRISPR genome editing followed by DNA sequencing
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR821PLA
released
FAIRE-seq
of kidney
Homo sapiens
kidney female adult (30 years) and male adult (54 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR405QWU
released
FAIRE-seq
of frontal cortex
Homo sapiens
frontal cortex female adult (67 years) and female adult (80 years)
Lab:
AMP-T2D consortium
Project:
AMP