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Citing CMDGA
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Assay category
4
3D chromatin structure
Assay
197
total RNA-seq
94
single cell RNA-seq
88
ChIP-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Project
AMP
3
HPAP
3
T1D
1
ITG
RFA
3
HPAP
3
T1D
1
ITG
Experiment status
7
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
4
primary cell
3
cell line
Organ
3
epithelium
3
pancreas
Life stage
4
adult
3
unknown
Available data
4
hic
3
bedpe bed3+
3
cool
Library made from
7
DNA
Date released
3
February, 2023
3
October, 2022
1
March, 2023
Lab
3
Klaus Kaestner, Upenn
3
Kyle Gaulton, UCSD
1
ITG
Replication type
4
anisogenic
3
isogenic
Audit category:
3
audit script error
award.project!
AMP
organ_slims!
kidney
Showing 7 of 7 results
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Experiment
DSR798SDK
released
Hi-C
of chondrocytes
Homo sapiens
chondrocytes female adult (58 years) and female adult (63 years) and female adult (65 years) and female adult (73 years) and female adult (75 years) and male adult (61 year) and male adult (72 years) and male adult (75 years)
Lab:
ITG
Project:
ITG
Experiment
DSR177NQH
released
Audit error
1
Hi-C
of pancreatic acinar cell
Homo sapiens
pancreatic acinar cell female adult (40 years) and female adult (58 years) and male adult (19 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR954WVM
released
Audit error
1
Hi-C
of pancreatic beta cell
Homo sapiens
pancreatic beta cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR767WCG
released
Audit error
1
Hi-C
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell female adult (27 years) and female adult (58 years) and male adult (35 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR991KIL
released
CRISPR genome editing followed by DNA sequencing
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR618IYM
released
CRISPR genome editing followed by DNA sequencing
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
Kyle Gaulton, UCSD
Project:
T1D
Experiment
DSR351ZKB
released
CRISPR genome editing followed by DNA sequencing
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
Kyle Gaulton, UCSD
Project:
T1D