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Assay category
1
DNA accessibility
Assay
885
ChIP-seq
496
total RNA-seq
271
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
48
WGBS
32
pCHi-C
18
Hi-C
10
RRBS
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
DNase-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
6
AMP
RFA
4
AMP
2
AMP2
Experiment status
6
released
Genome assembly (visualization)
3
hg19
Organism
5
Homo sapiens
Biosample type
tissue
3
cell line
2
in vitro differentiated cells
1
primary cell
Organ
4
epithelium
3
pancreas
2
connective tissue
1
blood vessel
1
vasculature
1
vein
Life stage
4
unknown
1
newborn
Available data
2
bed bed3+
1
bam
1
bed narrowPeak
1
bigBed narrowPeak
1
bigWig
1
tar
Library made from
5
DNA
Date released
4
August, 2021
1
February, 2023
1
October, 2019
Lab
4
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Replication type
3
unreplicated
2
anisogenic
1
isogenic
Audit category:
2
inconsistent ontology term
biosample_type!
tissue
files.file_type!
bigBed broadPeak
Showing 6 of 6 results
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Experiment
DSR465BDK
released
CRISPR genome editing followed by sgRNA sequencing
of EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR398PHK
released
Audit error
1
Capture-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR818RUI
released
Audit error
1
Capture-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR976OUK
released
Capture-C
of osteoblast
Homo sapiens
osteoblast
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
Experiment
DSR621POD
released
Capture-C
of adipocyte
Homo sapiens
adipocyte
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
Experiment
DSR024UHG
released
FAIRE-seq
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein newborn
Lab:
AMP-T2D consortium
Project:
AMP