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Assay category
3
DNA accessibility
Assay
1527
total RNA-seq
1070
ChIP-seq
501
ATAC-seq
360
single cell RNA-seq
87
RNA microarray
75
WGBS
74
snATAC-seq
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Organism
3
Homo sapiens
Biosample type
2
primary cell
1
cell line
1
tissue
Organ
3
epithelium
2
kidney
1
liver
1
pancreas
Life stage
3
adult
Available data
209
bam
209
bed narrowPeak
bigBed narrowPeak
209
bigWig
206
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
12
fastq
Library made from
3
DNA
Date released
2
October, 2019
1
August, 2017
1
February, 2023
Lab
4
AMP-T2D consortium
Replication type
2
anisogenic
2
unreplicated
files.file_type!
bigBed narrowPeak
lab.title!
Xin Sun, UCSD
month_released!
January, 2018
Showing 4 of 4 results
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Experiment
DSR465BDK
released
CRISPR genome editing followed by sgRNA sequencing
of EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR920RBU
released
DNase-seq
of kidney glomerular epithelial cell
Homo sapiens
kidney glomerular epithelial cell male adult (46 years) and male adult (62 years) and male adult (63 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR290FAD
released
DNase-seq
of kidney tubule cell
Homo sapiens
kidney tubule cell female adult (80 years) and male adult (62 years) and male adult (63 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR715510
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP