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Citing CMDGA
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Assay category
3
DNA accessibility
Assay
1653
ChIP-seq
1130
total RNA-seq
379
ATAC-seq
289
single cell RNA-seq
204
DNase-seq
87
RNA microarray
73
snATAC-seq
55
pCHi-C
25
Hi-C
24
WGBS
19
RRBS
16
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
5
AMP
RFA
3
AMP
2
AMP2
Experiment status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
2
in vitro differentiated cells
2
tissue
1
primary cell
Organ
pancreas
3
epithelium
2
connective tissue
1
blood vessel
1
brain
1
kidney
1
vasculature
1
vein
Life stage
2
adult
2
unknown
1
newborn
Available data
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
2
bed bed3+
1
tar
Library made from
5
DNA
Date released
2
August, 2021
2
July, 2019
1
October, 2019
Lab
3
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Replication type
4
anisogenic
1
isogenic
assay_title!
DNAme array
organ_slims!
pancreas
stomach
Showing 5 of 5 results
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Experiment
DSR976OUK
released
Capture-C
of osteoblast
Homo sapiens
osteoblast
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
Experiment
DSR621POD
released
Capture-C
of adipocyte
Homo sapiens
adipocyte
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
Experiment
DSR024UHG
released
FAIRE-seq
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein newborn
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR821PLA
released
FAIRE-seq
of kidney
Homo sapiens
kidney female adult (30 years) and male adult (54 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR405QWU
released
FAIRE-seq
of frontal cortex
Homo sapiens
frontal cortex female adult (67 years) and female adult (80 years)
Lab:
AMP-T2D consortium
Project:
AMP