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Assay category
3
Transcription
Assay
1864
ChIP-seq
531
ATAC-seq
212
DNase-seq
83
snATAC-seq
75
WGBS
68
total RNA-seq
57
pCHi-C
34
Hi-C
21
RRBS
5
FAIRE-seq
5
GRO-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
single cell RNA-seq
HiChIP
1
DNAme array
1
whole genome sequencing assay
0
RNA microarray
Project
7
AMP
RFA
5
AMP
2
AMP2
Experiment status
7
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
7
Homo sapiens
Target of assay
3
control
Biosample type
3
primary cell
2
cell line
2
in vitro differentiated cells
Organ
3
brain
2
connective tissue
2
epithelium
2
pancreas
Life stage
4
unknown
2
adult
1
child
Available data
3
bam
3
bigWig
3
tsv
2
bed bed3+
Library made from
452
RNA
7
DNA
Date released
4
August, 2021
3
July, 2019
Lab
5
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Replication type
3
isogenic
2
anisogenic
2
unreplicated
Audit category:
2
inconsistent ontology term
assay_title!
HiChIP
Showing 7 of 7 results
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Experiment
DSR398PHK
released
Audit error
1
Capture-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR818RUI
released
Audit error
1
Capture-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR976OUK
released
Capture-C
of osteoblast
Homo sapiens
osteoblast
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
Experiment
DSR621POD
released
Capture-C
of adipocyte
Homo sapiens
adipocyte
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
Experiment
DSR957CBL
released
single cell RNA-seq
of Purkinje cell
Homo sapiens
Purkinje cell male adult (20 years)
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR519VXU
released
single cell RNA-seq
of cerebellar granule cell
Homo sapiens
cerebellar granule cell male adult (20 years)
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR344ZYZ
released
single cell RNA-seq
of cerebellar granule cell
Homo sapiens
cerebellar granule cell male child (6 years)
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP