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Citing CMDGA
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Assay
1229
total RNA-seq
918
ChIP-seq
419
ATAC-seq
229
single cell RNA-seq
189
DNase-seq
87
RNA microarray
57
snATAC-seq
56
WGBS
55
pCHi-C
28
Hi-C
18
small RNA-seq
16
RRBS
10
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Organism
5
Homo sapiens
Biosample type
3
tissue
2
cell line
Organ
3
kidney
2
epithelium
2
pancreas
Life stage
3
adult
3
unknown
Available data
3
tsv
Library made from
3
RNA
2
DNA
Date released
3
February, 2021
2
August, 2021
Lab
5
AMP-T2D consortium
Struan F.A. Grant, CHOP
Replication type
3
unreplicated
2
anisogenic
Audit category:
2
inconsistent ontology term
files.file_type!
fastq
lab.title!
Struan F.A. Grant, CHOP
organ_slims!
vasculature
Showing 5 of 5 results
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Experiment
DSR398PHK
released
Audit error
1
Capture-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR818RUI
released
Audit error
1
Capture-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR983MYO
released
snDrop-seq
of kidney (medulla)
Homo sapiens
kidney male adult
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR718NCQ
released
snDrop-seq
of kidney (Cortex-Medulla)
Homo sapiens
kidney male adult
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR684WPX
released
snDrop-seq
of kidney (cortex)
Homo sapiens
kidney NONE and female adult and male adult
Lab:
AMP-T2D consortium
Project:
AMP