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Assay category
1
DNA sequencing
Assay
1863
ChIP-seq
982
total RNA-seq
508
ATAC-seq
351
single cell RNA-seq
212
DNase-seq
69
WGBS
57
snATAC-seq
55
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
5
AMP
RFA
3
AMP2
2
AMP
Experiment status
5
released
Genome assembly (visualization)
2
hg19
Organism
5
Homo sapiens
Biosample type
3
cell line
2
in vitro differentiated cells
Organ
2
connective tissue
2
epithelium
2
pancreas
1
liver
Life stage
5
unknown
Available data
2
bed bed3+
1
vcf
Library made from
5
DNA
Date released
5
August, 2021
Lab
2
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
Replication type
3
unreplicated
2
anisogenic
Audit category:
2
inconsistent ontology term
lab.title!
Maike Sander, UCSD
month_released!
February, 2021
Showing 5 of 5 results
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Experiment
DSR398PHK
released
Audit error
1
Capture-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR818RUI
released
Audit error
1
Capture-C
of EndoC_BH1
Homo sapiens
EndoC_BH1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR976OUK
released
Capture-C
of osteoblast
Homo sapiens
osteoblast
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
Experiment
DSR621POD
released
Capture-C
of adipocyte
Homo sapiens
adipocyte
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
Experiment
DSR246XUG
released
whole genome sequencing assay
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP