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Citing CMDGA
Clear Filters
Assay category
6
DNA binding
Assay
6
ChIP-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
6
GRCh38
6
hg19
Organism
6
Homo sapiens
Target of assay
109
transcription factor
41
control
21
RNA binding protein
11
chromatin remodeller
10
histone modification
9
histone
6
narrow histone mark
3
broad histone mark
3
other context
3
other post-translational modification
Biosample type
4
tissue
1
cell line
1
primary cell
Organ
5
liver
Life stage
5
unknown
1
child
Available data
6
bam
6
bed narrowPeak
6
bigWig
6
fastq
2
bigBed narrowPeak
Platform
3
Illumina HiSeq 2000
2
MiSeq
1
Illumina HiSeq 2500
Run type
106
single-ended
6
paired-ended
Read length (nt)
2
33
2
36
2
76
2
200
1
25
Library made from
6
DNA
Date released
5
August, 2017
1
November, 2017
Lab
6
AMP-T2D consortium
Replication type
4
unreplicated
2
isogenic
Audit category:
1
missing controlled_by
Audit category:
1
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_title!
pCHi-C
files.file_type!
bed bed3
Showing 6 of 6 results
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Experiment
TSTSR734739
released
Audit not_compliant
1
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR041814
released
ChIP-seq
of liver
Homo sapiens
liver
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR147664
released
ChIP-seq
of liver
Homo sapiens
liver
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR951386
released
ChIP-seq
of liver
Homo sapiens
liver
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR233208
released
ChIP-seq
of liver
Homo sapiens
liver
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR410352
released
Audit warning
3
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP