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Citing CMDGA
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Assay category
6
DNA methylation
2
DNA binding
Assay
25
single cell RNA-seq
19
snATAC-seq
17
pCHi-C
10
total RNA-seq
6
WGBS
3
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
ChIP-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Project
AMP
6
HPAP
2
T1D
RFA
6
HPAP
2
T1D
Experiment status
8
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
8
Homo sapiens
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Biosample type
6
primary cell
2
cell line
Organ
8
epithelium
8
pancreas
Life stage
adult
6
child
2
unknown
Available data
4
zippedFastqFolder
2
bam
2
bed narrowPeak
2
bigWig
2
fastq
2
tsv
Platform
6
Illumina NovaSeq 6000
Run type
6
paired-ended
Read length (nt)
4
101
2
100
Library made from
8
DNA
Date released
4
May, 2022
2
February, 2021
1
March, 2020
1
May, 2021
Lab
6
Klaus Kaestner, Upenn
2
AMP-T2D consortium
Replication type
4
isogenic
4
unreplicated
Audit category:
2
inconsistent ontology term
award.project!
AMP
replicates.library.biosample.life_stage!
adult
Showing 8 of 8 results
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Experiment
DSR309DLG
released
WGBS
of pancreatic beta cell
Homo sapiens
pancreatic beta cell male child (8 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR818WOM
released
WGBS
of pancreatic beta cell
Homo sapiens
pancreatic beta cell male child (13 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR800UDW
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male child (8 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR838FDD
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male child (13 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR163MXE
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell male child (3 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR791IRT
released
WGBS
of pancreatic alpha cell
Homo sapiens
pancreatic alpha cell female child (14 years)
Lab:
Klaus Kaestner, Upenn
Project:
HPAP
Experiment
DSR780WPW
released
Audit error
1
ChIP-seq
of EndoC_BH1
Homo sapiens
EndoC_BH1
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
T1D
Experiment
DSR634CIJ
released
Audit error
1
ChIP-seq
of EndoC_BH1
Homo sapiens
EndoC_BH1
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
T1D