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Citing CMDGA
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Assay category
4
DNA binding
2
Transcription
Assay
4
ChIP-seq
2
single cell RNA-seq
2
total RNA-seq
1
ATAC-seq
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
6
GRCh38
6
hg19
Organism
6
Homo sapiens
Target of assay
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
Biosample type
6
primary cell
Organ
6
epithelium
6
pancreas
Life stage
14
adult
6
child
1
newborn
Available data
6
bam
6
bigWig
5
fastq
4
bed narrowPeak
2
tsv
Platform
4
Illumina HiSeq 2000
1
Illumina NextSeq 500
Run type
4
single-ended
1
paired-ended
Read length (nt)
4
51
1
75
Library insert size (nt)
1
>100
Library made from
4
DNA
2
RNA
Date released
4
September, 2018
1
April, 2018
1
August, 2018
Lab
6
AMP-T2D consortium
Replication type
5
unreplicated
1
anisogenic
Audit category:
4
missing controlled_by
target.investigated_as!
nucleotide modification
Showing 6 of 6 results
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Experiment
TSTSR655IQT
released
Audit not_compliant
1
ChIP-seq
of pancreatic acinar cell
Homo sapiens
pancreatic acinar cell male child (5 years)
Target:
H3K27me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR404NZY
released
Audit not_compliant
1
ChIP-seq
of pancreatic acinar cell
Homo sapiens
pancreatic acinar cell male child (5 years)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR902DAJ
released
Audit not_compliant
1
ChIP-seq
of pancreatic acinar cell
Homo sapiens
pancreatic acinar cell male child (5 years)
Target:
H3K4me1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR914KMR
released
Audit not_compliant
1
ChIP-seq
of pancreatic acinar cell
Homo sapiens
pancreatic acinar cell male child (5 years)
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR808284
released
single cell RNA-seq
of pancreatic acinar cell
Homo sapiens
pancreatic acinar cell male child (5 years) and male newborn (1 month)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR478665
released
single cell RNA-seq
of pancreatic acinar cell
Homo sapiens
pancreatic acinar cell male child (2 years)
Lab:
AMP-T2D consortium
Project:
AMP