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Citing CMDGA
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Assay category
2
DNA binding
Assay
2
ChIP-seq
Project
2
AMP
RFA
2
AMP
Experiment status
2
released
Genome assembly (visualization)
36
hg19
GRCh38
Organism
2
Homo sapiens
Target of assay
326
control
213
histone
213
histone modification
broad histone mark
104
narrow histone mark
66
transcription factor
14
RNA binding protein
2
chromatin remodeller
1
recombinant protein
Biosample type
2
cell line
Organ
2
liver
Life stage
2
child
Available data
2
bam
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
2
fastq
Platform
2
Illumina HiSeq 2500
Run type
2
paired-ended
Read length (nt)
2
25
2
36
Library made from
2
DNA
Date released
2
November, 2017
Lab
2
AMP-T2D consortium
Replication type
2
isogenic
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent control run_type
1
inconsistent control read length
assembly!
GRCh38
files.file_type!
hdf5
target.investigated_as!
broad histone mark
Showing 2 of 2 results
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Experiment
TSTSR369214
released
Audit not_compliant
1
Audit warning
1
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
NCOR1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR998180
released
Audit not_compliant
1
Audit warning
2
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
CHD4
Lab:
AMP-T2D consortium
Project:
AMP