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Citing CMDGA
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Assay category
5
DNA binding
Assay
5
ChIP-seq
2
DNase-seq
2
WGBS
1
total RNA-seq
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
5
GRCh38
5
hg19
Organism
5
Homo sapiens
Target of assay
4
histone
4
histone modification
3
broad histone mark
1
RNA binding protein
1
narrow histone mark
1
transcription factor
Biosample type
5
tissue
Organ
5
pancreas
Life stage
5
adult
Available data
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
5
fastq
Platform
4
Illumina HiSeq 2000
1
Illumina Genome Analyzer
Run type
5
single-ended
Read length (nt)
8
36
4
50
1
51
Mapped read length (nt)
1
51
Library made from
5
DNA
Date released
4
August, 2017
1
October, 2018
Lab
5
AMP-T2D consortium
Replication type
4
unreplicated
1
anisogenic
Audit category:
4
inconsistent control read length
files.read_length!
36
Showing 5 of 5 results
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Experiment
TSTSR141NSK
released
ChIP-seq
of pancreas
Homo sapiens
pancreas adult (54 years) and adult (60 years)
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR444776
released
Audit warning
1
ChIP-seq
of pancreas
Homo sapiens
pancreas female adult (30 years)
Target:
H3K9me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR387071
released
Audit warning
1
ChIP-seq
of pancreas
Homo sapiens
pancreas female adult (30 years)
Target:
H3K4me1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR387352
released
Audit warning
1
ChIP-seq
of pancreas
Homo sapiens
pancreas female adult (30 years)
Target:
H3K36me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR580423
released
Audit warning
1
ChIP-seq
of pancreas
Homo sapiens
pancreas female adult (30 years)
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP