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Citing CMDGA
Clear Filters
Assay category
3
DNA binding
Assay
3
ChIP-seq
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
GRCh38
3
hg19
Organism
3
Homo sapiens
Target of assay
2
chromatin remodeller
2
transcription factor
1
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Biosample type
2
cell line
1
primary cell
Organ
2
liver
Life stage
2
child
1
unknown
Available data
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
3
fastq
Platform
2
Illumina HiSeq 2500
1
Illumina HiSeq 2000
Run type
3
paired-ended
1
single-ended
Read length (nt)
3
36
2
25
1
76
Library made from
3
DNA
Date released
2
November, 2018
1
August, 2017
Lab
3
AMP-T2D consortium
Replication type
3
isogenic
Audit category:
missing controlled_by
Audit category:
51
inconsistent control read length
3
inconsistent assembly
3
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
December, 2019
Showing 3 of 3 results
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Experiment
TSTSR955CDP
released
Audit warning
2
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
KDM5A
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR367UKS
released
Audit warning
2
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
PHF8
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR410352
released
Audit warning
3
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP