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Schema
Citing CMDGA
Clear Filters
Assay category
4
DNA binding
Assay
4
ChIP-seq
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Target of assay
2
histone
2
histone modification
2
narrow histone mark
2
transcription factor
1
chromatin remodeller
Biosample type
2
cell line
1
primary cell
1
tissue
Organ
2
liver
1
pancreas
Life stage
2
child
1
adult
1
unknown
Available data
4
bam
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
4
fastq
Platform
2
Illumina HiSeq 2000
2
Illumina HiSeq 2500
Run type
4
single-ended
1
paired-ended
Read length (nt)
31
36
19
50
9
25
4
44
4
76
3
40
2
70
1
30
1
67
1
72
Library made from
4
DNA
Date released
2
November, 2017
1
August, 2017
1
October, 2018
Lab
4
AMP-T2D consortium
Replication type
4
isogenic
Audit category:
4
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bed3
files.platform.term_name!
MiSeq
Showing 4 of 4 results
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Experiment
TSTSR473FQY
released
Audit warning
1
ChIP-seq
of body of pancreas
Homo sapiens
body of pancreas male adult (37 years)
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR753947
released
Audit warning
1
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
ZMYM3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR573562
released
Audit warning
1
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
BRD4
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR410352
released
Audit warning
3
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP