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Citing CMDGA
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Assay category
4
DNA binding
Assay
197
total RNA-seq
141
single cell RNA-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
4
ChIP-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Project
AMP
4
T1D
RFA
4
T1D
Experiment status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Biosample type
2
cell line
2
tissue
Organ
4
pancreas
2
epithelium
Life stage
2
adult
2
unknown
Available data
88
bam
88
bed narrowPeak
88
bigWig
tagAlign
Library made from
4
DNA
Date released
3
March, 2020
1
May, 2021
Lab
4
AMP-T2D consortium
Replication type
2
anisogenic
2
isogenic
Audit category:
2
inconsistent ontology term
award.project!
AMP
files.file_type!
tagAlign
lab.title!
Struan F.A. Grant, CHOP
Showing 4 of 4 results
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Experiment
DSR269GKW
released
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (53 years) and female adult (62 years) and male adult (34 years) and male adult (52 years)
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
T1D
Experiment
DSR886XRY
released
ChIP-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (53 years) and female adult (62 years) and male adult (34 years) and male adult (52 years)
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
T1D
Experiment
DSR780WPW
released
Audit error
1
ChIP-seq
of EndoC_BH1
Homo sapiens
EndoC_BH1
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
T1D
Experiment
DSR634CIJ
released
Audit error
1
ChIP-seq
of EndoC_BH1
Homo sapiens
EndoC_BH1
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
T1D