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Citing CMDGA
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Assay category
5
DNA binding
Assay
5
ChIP-seq
1
DNase-seq
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
5
Homo sapiens
Target of assay
4
histone
4
histone modification
3
narrow histone mark
2
RNA binding protein
2
transcription factor
1
broad histone mark
chromatin remodeller
Biosample type
5
primary cell
Life stage
5
unknown
Available data
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
5
fastq
4
bed broadPeak
4
bigBed broadPeak
3
tagAlign
Platform
8
Illumina Genome Analyzer IIe
Illumina Genome Analyzer IIx
1
Illumina HiSeq 2000
Run type
5
single-ended
1
paired-ended
Read length (nt)
5
36
1
76
Library made from
5
DNA
Date released
5
August, 2017
Lab
5
AMP-T2D consortium
Replication type
5
isogenic
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
files.platform.term_name!
Illumina Genome Analyzer IIx
target.investigated_as!
chromatin remodeller
Showing 5 of 5 results
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Experiment
TSTSR410352
released
Audit warning
3
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR204688
released
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
H3K4me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR016105
released
Audit warning
1
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
H3K4me1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR897624
released
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
H3K27ac
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR132965
released
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP