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Assay category
1870
DNA binding
Assay
1870
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
85
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
1782
AMP
88
T1D
RFA
1764
AMP
88
T1D
18
AMP2
Experiment status
1870
released
Genome assembly (visualization)
1304
hg19
1265
GRCh38
Organism
1863
Homo sapiens
Target of assay
1016
histone modification
1015
histone
514
transcription factor
513
narrow histone mark
501
broad histone mark
335
control
114
RNA binding protein
89
recombinant protein
36
chromatin remodeller
5
other context
5
other post-translational modification
Biosample type
907
tissue
483
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
551
liver
218
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Life stage
909
adult
418
child
381
unknown
121
embryonic
38
newborn
Available data
1577
bam
1389
bigWig
1324
bed narrowPeak
856
fastq
800
bigBed narrowPeak
398
tagAlign
113
bed broadPeak
78
bigBed broadPeak
53
bed bed3+
3
tar
1
tagAlign bed3+
Platform
376
Illumina HiSeq 2000
136
Illumina HiSeq 2500
128
Illumina Genome Analyzer IIx
105
Illumina Genome Analyzer
77
Illumina HiSeq 4000
25
Illumina Genome Analyzer II
16
Illumina Genome Analyzer IIe
8
HiSeq 1500
7
MiSeq
2
Applied Biosystems SOLiD System 3 Plus
Illumina Genome Analyzer I
Run type
695
single-ended
163
paired-ended
Read length (nt)
248
36
193
76
133
100
128
50
53
51
51
40
14
27
11
25
10
101
9
35
7
33
7
49
6
200
5
32
4
44
4
61
4
75
3
67
2
37
2
38
2
70
2
74
1
30
1
72
Mapped read length (nt)
5
50
4
36
2
51
Library made from
1863
DNA
Date released
405
November, 2017
296
August, 2017
242
October, 2019
165
May, 2021
120
May, 2019
94
December, 2017
80
April, 2019
74
October, 2018
70
November, 2018
50
May, 2020
43
August, 2021
40
May, 2024
34
December, 2018
32
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
15
October, 2017
13
November, 2019
8
February, 2021
6