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Citing CMDGA
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Assay category
5
DNA binding
Assay
5
ChIP-seq
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
5
Homo sapiens
Target of assay
3
RNA binding protein
3
transcription factor
1
broad histone mark
1
control
1
histone
1
histone modification
Biosample type
3
cell line
2
primary cell
Organ
3
liver
2
brain
2
epithelium
2
vasculature
1
blood vessel
Life stage
3
child
2
unknown
Available data
5
bam
5
bigWig
5
fastq
4
bed broadPeak
4
bed narrowPeak
4
bigBed broadPeak
4
bigBed narrowPeak
1
tagAlign
Platform
173
Illumina HiSeq 2000
59
Illumina Genome Analyzer IIx
58
Illumina Genome Analyzer
22
Illumina HiSeq 2500
10
Illumina HiSeq 4000
8
Illumina Genome Analyzer IIe
5
Illumina Genome Analyzer II
1
Illumina Genome Analyzer I
Run type
5
single-ended
Read length (nt)
4
36
1
32
Library made from
5
DNA
Date released
12
August, 2017
5
November, 2017
4
October, 2017
4
September, 2017
Lab
5
AMP-T2D consortium
Replication type
4
isogenic
1
unreplicated
Audit category:
1
inconsistent control read length
month_released!
August, 2018
February, 2020
Showing 5 of 5 results
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Experiment
TSTSR411985
released
ChIP-seq
of choroid plexus epithelial cell
Homo sapiens
choroid plexus epithelial cell
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR492951
released
ChIP-seq
of brain microvascular endothelial cell
Homo sapiens
brain microvascular endothelial cell
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR762932
released
Audit warning
1
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
H3K27me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR271600
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR986322
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP