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Citing CMDGA
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Assay category
5
DNA binding
Assay
5
ChIP-seq
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
5
GRCh38
5
hg19
Organism
5
Homo sapiens
Target of assay
13
histone
13
histone modification
8
narrow histone mark
5
broad histone mark
2
RNA binding protein
2
transcription factor
1
control
Biosample type
3
primary cell
2
cell line
Organ
2
liver
Life stage
3
unknown
2
child
Available data
5
bam
5
bed broadPeak
5
bed narrowPeak
5
bigBed broadPeak
5
bigBed narrowPeak
5
bigWig
5
fastq
5
tagAlign
Platform
23
Illumina Genome Analyzer IIx
9
Illumina HiSeq 2000
6
Illumina Genome Analyzer
5
Illumina Genome Analyzer II
5
Illumina Genome Analyzer IIe
5
Illumina HiSeq 2500
Run type
5
single-ended
Read length (nt)
5
36
Library made from
5
DNA
Date released
3
August, 2017
2
November, 2017
Lab
5
AMP-T2D consortium
Replication type
5
isogenic
Audit category:
2
inconsistent control read length
1
inconsistent assembly
files.read_length!
35
Showing 5 of 5 results
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Experiment
TSTSR139931
released
Audit warning
1
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
H4K20me1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR364497
released
Audit warning
1
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
H3K36me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR016105
released
Audit warning
1
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
H3K4me1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR802533
released
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
H3K36me3
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR685933
released
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
H3K27me3
Lab:
AMP-T2D consortium
Project:
AMP