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Schema
Citing CMDGA
Clear Filters
Assay category
3
DNA binding
Assay
3
ChIP-seq
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Target of assay
histone
13
histone modification
8
narrow histone mark
5
broad histone mark
2
RNA binding protein
2
transcription factor
1
control
Biosample type
2
cell line
1
primary cell
Organ
2
liver
Life stage
2
child
1
unknown
Available data
3
bam
3
bigWig
3
fastq
2
bed broadPeak
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
tagAlign
Platform
307
Illumina HiSeq 2000
81
Illumina Genome Analyzer IIx
79
Illumina HiSeq 2500
77
Illumina HiSeq 4000
67
Illumina Genome Analyzer
16
Illumina Genome Analyzer II
8
HiSeq 1500
3
Illumina Genome Analyzer IIe
3
MiSeq
2
Applied Biosystems SOLiD System 3 Plus
Run type
3
single-ended
Read length (nt)
3
36
Library made from
3
DNA
Date released
2
November, 2017
1
August, 2017
Lab
3
AMP-T2D consortium
Replication type
3
isogenic
Audit category:
1
inconsistent control read length
organ_slims!
ovary
target.investigated_as!
histone
Showing 3 of 3 results
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Experiment
TSTSR310667
released
Audit warning
1
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR097481
released
ChIP-seq
of HepG2
Homo sapiens
HepG2
Target:
Control
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR132965
released
ChIP-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast male (22 years)
Target:
CTCF
Lab:
AMP-T2D consortium
Project:
AMP