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Citing CMDGA
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Assay category
4
DNA accessibility
Assay
885
ChIP-seq
404
total RNA-seq
222
ATAC-seq
104
single cell RNA-seq
32
pCHi-C
15
Hi-C
10
RRBS
8
snATAC-seq
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
DNase-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
primary cell
tissue
1
cell line
Organ
3
epithelium
3
kidney
Life stage
2
adult
1
child
1
unknown
Available data
32
bam
32
bed narrowPeak
32
bigBed narrowPeak
32
bigWig
bed broadPeak
30
bigBed broadPeak
28
bed bed3+
2
fastq
Library made from
4
DNA
Date released
3
October, 2019
1
August, 2017
Lab
4
AMP-T2D consortium
Replication type
2
anisogenic
2
isogenic
assay_title!
CRISPR genome editing followed by sgRNA sequencing
biosample_type!
tissue
files.file_type!
bed broadPeak
lab.title!
Klaus Kaestner, Upenn
Showing 4 of 4 results
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Experiment
DSR366LGT
released
DNase-seq
of glomerular visceral epithelial cell
Homo sapiens
glomerular visceral epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR920RBU
released
DNase-seq
of kidney glomerular epithelial cell
Homo sapiens
kidney glomerular epithelial cell male adult (46 years) and male adult (62 years) and male adult (63 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR290FAD
released
DNase-seq
of kidney tubule cell
Homo sapiens
kidney tubule cell female adult (80 years) and male adult (62 years) and male adult (63 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR986440
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP