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Assay category
5
DNA accessibility
Assay
1414
total RNA-seq
1331
ChIP-seq
500
ATAC-seq
369
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
74
WGBS
51
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
5
DNase-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
3
snDrop-seq
Capture-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
tissue
cell line
Organ
2
epithelium
2
kidney
1
liver
1
pancreas
Life stage
3
adult
2
unknown
Available data
207
bam
207
bed narrowPeak
207
bigBed narrowPeak
207
bigWig
bed broadPeak
205
bigBed broadPeak
203
bed bed3+
12
fastq
Platform
1
Illumina Genome Analyzer
Run type
1
single-ended
Read length (nt)
1
20
Library made from
5
DNA
Date released
3
August, 2017
2
October, 2019
Lab
5
AMP-T2D consortium
Replication type
3
anisogenic
1
isogenic
1
unreplicated
assay_title!
Capture-C
biosample_type!
cell line
files.file_type!
bed broadPeak
Showing 5 of 5 results
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Experiment
DSR920RBU
released
DNase-seq
of kidney glomerular epithelial cell
Homo sapiens
kidney glomerular epithelial cell male adult (46 years) and male adult (62 years) and male adult (63 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR290FAD
released
DNase-seq
of kidney tubule cell
Homo sapiens
kidney tubule cell female adult (80 years) and male adult (62 years) and male adult (63 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR715510
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR986440
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171380
released
DNase-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Lab:
AMP-T2D consortium
Project:
AMP