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Assay category
2
DNA accessibility
Assay
362
ChIP-seq
299
total RNA-seq
128
ATAC-seq
49
pCHi-C
RRBS
9
Hi-C
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
single cell RNA-seq
4
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
DNase-seq
2
HiChIP
2
RNA microarray
1
FAIRE-seq
1
snDrop-seq
1
whole genome sequencing assay
Project
2
AMP
RFA
2
AMP
Experiment status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
1
primary cell
1
tissue
Organ
1
pancreas
Life stage
3
adult
2
unknown
1
child
Available data
20
bam
20
bed narrowPeak
20
bigBed narrowPeak
20
bigWig
18
bed broadPeak
bigBed broadPeak
16
bed bed3+
3
fastq
Platform
1
Illumina Genome Analyzer
Run type
1
single-ended
Read length (nt)
1
20
Library made from
2
DNA
Date released
2
August, 2017
Lab
2
AMP-T2D consortium
Replication type
1
anisogenic
1
isogenic
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Experiment
TSTSR986440
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171380
released
DNase-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Lab:
AMP-T2D consortium
Project:
AMP