Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Assay category
5
3D chromatin structure
1
DNA accessibility
Assay
663
total RNA-seq
338
ChIP-seq
43
ATAC-seq
11
WGBS
8
pCHi-C
6
small RNA-seq
5
Hi-C
5
single cell RNA-seq
3
RRBS
2
Capture-C
2
STARR-seq
1
DNase-seq
1
RNA microarray
1
whole genome sequencing assay
Project
6
AMP
RFA
5
AMP
1
AMP2
Experiment status
6
released
Genome assembly (visualization)
4
hg19
Organism
6
Homo sapiens
Biosample type
2
cell line
2
primary cell
2
tissue
Organ
10
epithelium
9
pancreas
6
musculature of body
5
blood vessel
5
liver
5
vasculature
4
limb
3
brain
3
heart
3
kidney
2
vein
1
connective tissue
Life stage
3
unknown
2
adult
1
child
Available data
15
bigWig
14
bed bed3+
13
bam
13
bed broadPeak
13
bed narrowPeak
13
bigBed broadPeak
bigBed narrowPeak
6
fastq
2
bedpe bed3+
2
hdf5
2
hic
Platform
1
Illumina HiSeq 2000
Run type
1
paired-ended
Read length (nt)
1
50
Library made from
6
DNA
Date released
2
July, 2019
1
August, 2017
1
August, 2021
1
December, 2018
1
March, 2020
Lab
5
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
3
isogenic
3
unreplicated
files.file_type!
bigBed narrowPeak
Showing 6 of 6 results
table-tab-icon
matrix-icon
Download
Experiment
DSR744JJN
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR477FKL
released
Hi-C
of liver
Homo sapiens
liver male adult (32 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR770TGA
released
Hi-C
of brain pericyte
Homo sapiens
brain pericyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR933OWU
released
Hi-C
of endothelial cell of hepatic sinusoid
Homo sapiens
endothelial cell of hepatic sinusoid
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR715510
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP