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Schema
Citing CMDGA
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Assay category
3
DNA accessibility
1
3D chromatin structure
Assay
122
total RNA-seq
72
ChIP-seq
18
ATAC-seq
3
DNase-seq
1
Hi-C
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
1
cell line
1
in vitro differentiated cells
1
primary cell
1
tissue
Organ
2
liver
1
connective tissue
Life stage
2
unknown
1
child
1
embryonic
Available data
4
fastq
3
bam
3
bed broadPeak
3
bed narrowPeak
3
bigBed broadPeak
3
bigBed narrowPeak
3
bigWig
1
bed bed3+
Platform
6
Illumina HiSeq 4000
4
Illumina HiSeq 2000
4
Illumina NextSeq 500
2
Illumina HiSeq 2500
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
Run type
4
paired-ended
2
single-ended
Read length (nt)
3
36
1
50
1
101
Library made from
4
DNA
Date released
2
August, 2017
1
December, 2018
1
November, 2018
Lab
4
AMP-T2D consortium
Replication type
3
isogenic
1
anisogenic
organ_slims!
nerve
Showing 4 of 4 results
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Experiment
TSTSR542TGF
released
Hi-C
of HepG2
Homo sapiens
HepG2
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR004CBL
released
DNase-seq
of liver
Homo sapiens
liver embryo (59 days) and embryo (80 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR999372
released
DNase-seq
of adipocyte
Homo sapiens
adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR251267
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP