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Assay category
7
DNA accessibility
Assay
1412
total RNA-seq
1330
ChIP-seq
493
ATAC-seq
369
single cell RNA-seq
87
RNA microarray
83
snATAC-seq
74
WGBS
50
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
7
DNase-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
0
shRNA RNA-seq
Project
7
AMP
RFA
7
AMP
Experiment status
7
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
4
primary cell
cell line
2
tissue
1
in vitro differentiated cells
Organ
2
epithelium
2
kidney
1
connective tissue
1
liver
1
pancreas
Life stage
4
unknown
3
adult
Available data
207
bam
207
bed narrowPeak
207
bigBed narrowPeak
207
bigWig
205
bed broadPeak
205
bigBed broadPeak
bed bed3+
12
fastq
Platform
2
Illumina HiSeq 2000
1
Illumina Genome Analyzer
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
Run type
2
paired-ended
2
single-ended
Read length (nt)
2
36
1
20
1
101
Library made from
7
DNA
Date released
5
August, 2017
2
October, 2019
Lab
7
AMP-T2D consortium
Replication type
3
anisogenic
3
isogenic
1
unreplicated
biosample_type!
cell line
files.file_type!
bed bed3+
month_released!
September, 2017
Showing 7 of 7 results
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Experiment
DSR920RBU
released
DNase-seq
of kidney glomerular epithelial cell
Homo sapiens
kidney glomerular epithelial cell male adult (46 years) and male adult (62 years) and male adult (63 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR290FAD
released
DNase-seq
of kidney tubule cell
Homo sapiens
kidney tubule cell female adult (80 years) and male adult (62 years) and male adult (63 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR999372
released
DNase-seq
of adipocyte
Homo sapiens
adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR715510
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR251267
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR986440
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171380
released
DNase-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Lab:
AMP-T2D consortium
Project:
AMP