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Assay category
5
DNA accessibility
1
Transcription
Assay
605
ChIP-seq
286
ATAC-seq
263
single cell RNA-seq
243
total RNA-seq
87
RNA microarray
66
snATAC-seq
58
WGBS
40
pCHi-C
32
Hi-C
21
RRBS
10
MeRIP-seq
5
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Project
5
AMP
1
community
RFA
5
AMP
1
community
Experiment status
6
released
Genome assembly (visualization)
GRCh38
186
hg19
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
cell line
1
tissue
Organ
2
epithelium
2
kidney
1
liver
Life stage
3
adult
2
unknown
Available data
2
bam
2
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
1
bed broadPeak
1
bigBed broadPeak
1
fastq
Platform
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
1
Illumina HiSeq 2000
Run type
1
paired-ended
1
single-ended
Read length (nt)
1
36
1
101
Library made from
5
DNA
Date released
3
August, 2017
2
October, 2019
1
March, 2023
Lab
5
AMP-T2D consortium
1
Anna Gloyn, Oxford
Replication type
2
anisogenic
2
isogenic
2
unreplicated
assembly!
GRCh38
award.project!
T1D
files.file_type!
vcf
Showing 6 of 6 results
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Experiment
DSR032JSO
released
siRNA RNA-seq
of EndoC-BH1
Lab:
Anna Gloyn, Oxford
Project:
community
Experiment
DSR920RBU
released
DNase-seq
of kidney glomerular epithelial cell
Homo sapiens
kidney glomerular epithelial cell male adult (46 years) and male adult (62 years) and male adult (63 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR290FAD
released
DNase-seq
of kidney tubule cell
Homo sapiens
kidney tubule cell female adult (80 years) and male adult (62 years) and male adult (63 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR715510
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR251267
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR986440
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP