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Citing CMDGA
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Assay category
6
DNA accessibility
Assay
1655
ChIP-seq
1395
total RNA-seq
427
ATAC-seq
284
single cell RNA-seq
87
RNA microarray
54
pCHi-C
35
snATAC-seq
28
Hi-C
23
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
6
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
3
primary cell
2
tissue
1
cell line
Organ
3
epithelium
3
kidney
1
liver
1
pancreas
Life stage
3
adult
2
unknown
1
child
Available data
199
bam
199
bed narrowPeak
199
bigBed narrowPeak
199
bigWig
bed bed3+
196
bed broadPeak
196
bigBed broadPeak
2
fastq
Platform
1
Illumina Genome Analyzer
Run type
paired-ended
2
single-ended
Read length (nt)
1
20
Library made from
6
DNA
Date released
3
August, 2017
3
October, 2019
Lab
6
AMP-T2D consortium
Replication type
3
anisogenic
2
isogenic
1
unreplicated
audit.ERROR.category!
inconsistent replicate
files.file_type!
bed bed3+
files.run_type!
paired-ended
Showing 6 of 6 results
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Experiment
DSR366LGT
released
DNase-seq
of glomerular visceral epithelial cell
Homo sapiens
glomerular visceral epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR920RBU
released
DNase-seq
of kidney glomerular epithelial cell
Homo sapiens
kidney glomerular epithelial cell male adult (46 years) and male adult (62 years) and male adult (63 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR290FAD
released
DNase-seq
of kidney tubule cell
Homo sapiens
kidney tubule cell female adult (80 years) and male adult (62 years) and male adult (63 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR715510
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR986440
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171380
released
DNase-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Lab:
AMP-T2D consortium
Project:
AMP