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Citing CMDGA
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Assay category
6
DNA accessibility
Assay
471
total RNA-seq
131
ChIP-seq
25
ATAC-seq
6
DNase-seq
6
WGBS
5
pCHi-C
4
single cell RNA-seq
3
small RNA-seq
2
Capture-C
1
Hi-C
1
RNA microarray
Project
6
AMP
RFA
6
AMP
Experiment status
6
released
Genome assembly (visualization)
6
GRCh38
6
hg19
Organism
6
Homo sapiens
Biosample type
3
primary cell
2
tissue
1
in vitro differentiated cells
Organ
81
kidney
36
limb
33
musculature of body
32
brain
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Life stage
3
adult
3
unknown
Available data
6
bam
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
6
bigWig
5
bed bed3+
2
fastq
Platform
1
Illumina HiSeq 2000
1
Illumina HiSeq 4000
1
Illumina NextSeq 500
Run type
2
paired-ended
Read length (nt)
2
36
Library made from
6
DNA
Date released
3
June, 2019
1
August, 2017
1
November, 2018
1
November, 2020
Lab
6
AMP-T2D consortium
Replication type
5
unreplicated
1
isogenic
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
heart
spinal cord
Showing 6 of 6 results
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Experiment
DSR457QKP
released
DNase-seq
of osteoblast
Homo sapiens
osteoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR256LQY
released
DNase-seq
of omental fat pad
Homo sapiens
omental fat pad female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR507IHX
released
DNase-seq
of brain pericyte
Homo sapiens
brain pericyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR762OSH
released
DNase-seq
of hepatic stellate cell
Homo sapiens
hepatic stellate cell female adult (59 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR521KIV
released
DNase-seq
of omental fat pad
Homo sapiens
omental fat pad female adult (51 year)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR999372
released
DNase-seq
of adipocyte
Homo sapiens
adipocyte
Lab:
AMP-T2D consortium
Project:
AMP