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Assay category
3
DNA accessibility
Assay
1534
ChIP-seq
1280
total RNA-seq
331
ATAC-seq
173
single cell RNA-seq
87
RNA microarray
40
pCHi-C
28
WGBS
24
Hi-C
18
snATAC-seq
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
3
AMP
RFA
3
AMP
Experiment status
3
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
3
Homo sapiens
Biosample type
primary cell
2
tissue
1
cell line
Organ
1
epithelium
1
kidney
1
liver
1
pancreas
Life stage
1
adult
1
child
1
unknown
Available data
180
bam
180
bed narrowPeak
180
bigBed narrowPeak
180
bigWig
178
bed broadPeak
bigBed broadPeak
177
bed bed3+
11
fastq
Platform
1
Illumina Genome Analyzer
Run type
1
single-ended
Read length (nt)
1
20
Library made from
3
DNA
Date released
2
August, 2017
1
October, 2019
Lab
3
AMP-T2D consortium
Replication type
1
anisogenic
1
isogenic
1
unreplicated
biosample_type!
primary cell
files.file_type!
bigBed broadPeak
month_released!
April, 2020
Showing 3 of 3 results
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Experiment
DSR366LGT
released
DNase-seq
of glomerular visceral epithelial cell
Homo sapiens
glomerular visceral epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR715510
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171380
released
DNase-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Lab:
AMP-T2D consortium
Project:
AMP