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Citing CMDGA
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Assay category
4
DNA accessibility
Assay
653
ChIP-seq
315
total RNA-seq
125
ATAC-seq
71
single cell RNA-seq
52
WGBS
9
Hi-C
7
RRBS
6
MeRIP-seq
4
DNase-seq
3
small RNA-seq
2
Capture-C
2
STARR-seq
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
1
whole genome sequencing assay
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
4
Homo sapiens
Biosample type
2
primary cell
1
cell line
1
tissue
Organ
3
epithelium
3
kidney
1
connective tissue
1
liver
1
pancreas
Life stage
3
adult
1
child
Available data
21
bam
21
bed narrowPeak
21
bigBed narrowPeak
21
bigWig
bed bed3+
20
bed broadPeak
20
bigBed broadPeak
3
fastq
Library made from
4
DNA
Date released
3
October, 2019
1
August, 2017
Lab
4
AMP-T2D consortium
Replication type
2
anisogenic
1
isogenic
1
unreplicated
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Experiment
DSR366LGT
released
DNase-seq
of glomerular visceral epithelial cell
Homo sapiens
glomerular visceral epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR920RBU
released
DNase-seq
of kidney glomerular epithelial cell
Homo sapiens
kidney glomerular epithelial cell male adult (46 years) and male adult (62 years) and male adult (63 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR290FAD
released
DNase-seq
of kidney tubule cell
Homo sapiens
kidney tubule cell female adult (80 years) and male adult (62 years) and male adult (63 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR715510
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP