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Citing CMDGA
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Assay category
5
DNA accessibility
Assay
1565
ChIP-seq
1335
total RNA-seq
425
ATAC-seq
280
single cell RNA-seq
87
RNA microarray
79
snATAC-seq
75
WGBS
28
pCHi-C
21
RRBS
19
Hi-C
7
small RNA-seq
6
MeRIP-seq
5
DNase-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
snDrop-seq
1
whole genome sequencing assay
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
2
primary cell
1
cell line
1
in vitro differentiated cells
1
tissue
Organ
1
connective tissue
1
epithelium
1
kidney
1
liver
Life stage
3
unknown
1
adult
1
child
Available data
182
bam
182
bed narrowPeak
182
bigBed narrowPeak
182
bigWig
180
bed broadPeak
180
bigBed broadPeak
bed bed3+
10
fastq
Platform
2
Illumina HiSeq 2000
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
Run type
2
paired-ended
1
single-ended
Read length (nt)
2
36
1
101
Library made from
5
DNA
Date released
4
August, 2017
1
October, 2019
Lab
5
AMP-T2D consortium
Replication type
4
isogenic
anisogenic
1
unreplicated
files.file_type!
bed bed3+
files.platform.term_name!
Illumina Genome Analyzer
organ_slims!
vein
replication_type!
anisogenic
Showing 5 of 5 results
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Experiment
DSR366LGT
released
DNase-seq
of glomerular visceral epithelial cell
Homo sapiens
glomerular visceral epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR999372
released
DNase-seq
of adipocyte
Homo sapiens
adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR715510
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR251267
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR986440
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP