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Citing CMDGA
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Assay category
7
DNA accessibility
Assay
872
total RNA-seq
738
ChIP-seq
472
ATAC-seq
365
single cell RNA-seq
86
RNA microarray
83
snATAC-seq
69
WGBS
35
pCHi-C
29
Hi-C
20
RRBS
15
small RNA-seq
10
MeRIP-seq
7
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
7
AMP
RFA
7
AMP
Experiment status
7
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
4
primary cell
2
tissue
1
cell line
Organ
3
epithelium
3
kidney
connective tissue
1
liver
1
pancreas
Life stage
3
adult
3
unknown
1
child
Available data
200
bam
200
bed narrowPeak
200
bigBed narrowPeak
200
bigWig
197
bed broadPeak
197
bigBed broadPeak
bed bed3+
10
fastq
Platform
1
Illumina Genome Analyzer
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
1
Illumina HiSeq 2000
Run type
2
single-ended
1
paired-ended
Read length (nt)
1
20
1
36
1
101
Library made from
7
DNA
Date released
4
August, 2017
3
October, 2019
Lab
7
AMP-T2D consortium
Replication type
3
anisogenic
3
isogenic
1
unreplicated
files.file_type!
bed bed3+
month_released!
May, 2021
organ_slims!
connective tissue
target.investigated_as!
histone
Showing 7 of 7 results
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Experiment
DSR366LGT
released
DNase-seq
of glomerular visceral epithelial cell
Homo sapiens
glomerular visceral epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR920RBU
released
DNase-seq
of kidney glomerular epithelial cell
Homo sapiens
kidney glomerular epithelial cell male adult (46 years) and male adult (62 years) and male adult (63 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR290FAD
released
DNase-seq
of kidney tubule cell
Homo sapiens
kidney tubule cell female adult (80 years) and male adult (62 years) and male adult (63 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR715510
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR251267
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR986440
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR171380
released
DNase-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans
Lab:
AMP-T2D consortium
Project:
AMP