Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Assay category
7
DNA accessibility
Assay
1621
ChIP-seq
1128
total RNA-seq
375
ATAC-seq
289
single cell RNA-seq
87
RNA microarray
72
snATAC-seq
53
pCHi-C
24
WGBS
21
Hi-C
19
RRBS
16
small RNA-seq
7
DNase-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
7
AMP
RFA
7
AMP
Experiment status
7
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
7
Homo sapiens
Biosample type
4
primary cell
1
cell line
1
in vitro differentiated cells
1
tissue
Organ
3
epithelium
3
kidney
1
connective tissue
1
liver
pancreas
Life stage
3
adult
3
unknown
1
child
Available data
201
bam
201
bed narrowPeak
201
bigBed narrowPeak
201
bigWig
199
bed broadPeak
199
bigBed broadPeak
bed bed3+
9
fastq
Platform
2
Illumina HiSeq 2000
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
Run type
2
paired-ended
1
single-ended
Read length (nt)
2
36
1
101
Library made from
7
DNA
Date released
4
August, 2017
3
October, 2019
Lab
7
AMP-T2D consortium
Replication type
4
isogenic
2
anisogenic
1
unreplicated
files.file_type!
bed bed3+
organ_slims!
pancreas
stomach
Showing 7 of 7 results
table-tab-icon
matrix-icon
Download
Experiment
DSR366LGT
released
DNase-seq
of glomerular visceral epithelial cell
Homo sapiens
glomerular visceral epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR920RBU
released
DNase-seq
of kidney glomerular epithelial cell
Homo sapiens
kidney glomerular epithelial cell male adult (46 years) and male adult (62 years) and male adult (63 years) and male adult (65 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR290FAD
released
DNase-seq
of kidney tubule cell
Homo sapiens
kidney tubule cell female adult (80 years) and male adult (62 years) and male adult (63 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR999372
released
DNase-seq
of adipocyte
Homo sapiens
adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR715510
released
DNase-seq
of right lobe of liver
Homo sapiens
right lobe of liver female adult (53 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR251267
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR986440
released
DNase-seq
of skeletal muscle myoblast
Homo sapiens
skeletal muscle myoblast
Lab:
AMP-T2D consortium
Project:
AMP