Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Clear Filters
Assay category
212
DNA accessibility
Assay
1871
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
85
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
212
AMP
RFA
212
AMP
Experiment status
212
released
Genome assembly (visualization)
207
GRCh38
186
hg19
Organism
212
Homo sapiens
Biosample type
178
tissue
31
primary cell
2
cell line
1
in vitro differentiated cells
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Life stage
141
embryonic
45
adult
20
unknown
4
child
2
newborn
Available data
209
bam
209
bed narrowPeak
209
bigBed narrowPeak
209
bigWig
206
bed broadPeak
206
bigBed broadPeak
204
bed bed3+
12
fastq
Platform
6
Illumina HiSeq 4000
4
Illumina HiSeq 2000
4
Illumina NextSeq 500
2
Illumina HiSeq 2500
1
Illumina Genome Analyzer
1
Illumina Genome Analyzer II
1
Illumina Genome Analyzer IIx
Run type
10
paired-ended
3
single-ended
Read length (nt)
11
36
1
20
1
101
Library made from
212
DNA
Date released
187
June, 2019
10
October, 2019
9
November, 2018
5
August, 2017
1
November, 2020
Lab
212
AMP-T2D consortium
Replication type
163
unreplicated
27
anisogenic
22
isogenic
Audit category:
4
inconsistent ontology term
type!!!!
Target
Showing 6 of 212 results
table-tab-icon
matrix-icon
View All
Download
Experiment
DSR718ICF
released
DNase-seq
of Panc1
Homo sapiens
Panc1
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR542IIT
released
DNase-seq
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein newborn
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR450DRD
released
DNase-seq
of brain
Homo sapiens
brain male embryo (104 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR591PXJ
released
DNase-seq
of brain
Homo sapiens
brain male embryo (101 day)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR210FPP
released
DNase-seq
of brain
Homo sapiens
brain male embryo (72 days) and male embryo (76 days)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR616BRE
released
DNase-seq
of brain
Homo sapiens
brain embryo (112 days)
Lab:
AMP-T2D consortium
Project:
AMP