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Assay category
4
DNA accessibility
Assay
1819
ChIP-seq
1467
total RNA-seq
456
ATAC-seq
305
single cell RNA-seq
DNase-seq
85
RNA microarray
78
snATAC-seq
75
WGBS
55
pCHi-C
33
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
4
AMP
RFA
4
AMP
Experiment status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
tissue
1
primary cell
Organ
2
pancreas
1
blood vessel
1
brain
1
epithelium
kidney
1
vasculature
1
vein
Life stage
2
adult
1
newborn
1
unknown
Available data
4
bam
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
2
fastq
1
tar
Platform
2
Illumina Genome Analyzer I
Run type
2
single-ended
Read length (nt)
1
35
1
50
Library made from
4
DNA
Date released
1
August, 2017
1
July, 2019
1
November, 2018
1
October, 2019
Lab
4
AMP-T2D consortium
Replication type
2
anisogenic
1
isogenic
1
unreplicated
assay_title!
DNase-seq
organ_slims!
kidney
Showing 4 of 4 results
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Experiment
DSR024UHG
released
FAIRE-seq
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein newborn
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
DSR405QWU
released
FAIRE-seq
of frontal cortex
Homo sapiens
frontal cortex female adult (67 years) and female adult (80 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR803CTG
released
FAIRE-seq
of pancreas
Homo sapiens
pancreas adult (54 years) and adult (60 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR121227
released
FAIRE-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP