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Assay category
1
DNA accessibility
Assay
942
ChIP-seq
482
total RNA-seq
271
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
48
WGBS
34
DNase-seq
32
pCHi-C
18
Hi-C
10
RRBS
6
MeRIP-seq
5
STARR-seq
4
Capture-C
4
GRO-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
FAIRE-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Project
5
AMP
RFA
5
AMP
Experiment status
5
released
Genome assembly (visualization)
4
hg18
1
hg19
Organism
5
Homo sapiens
Biosample type
tissue
3
in vitro differentiated cells
1
primary cell
1
stem cell
Organ
1
blood vessel
embryo
1
epithelium
1
vasculature
1
vein
Life stage
4
unknown
1
newborn
Available data
5
bigWig
4
fastq
1
bam
1
bed narrowPeak
1
bigBed narrowPeak
1
tar
Platform
4
Illumina HiSeq 2500
Run type
4
single-ended
Read length (nt)
4
50
Library made from
5
DNA
Date released
4
January, 2018
1
October, 2019
Lab
5
AMP-T2D consortium
Replication type
4
unreplicated
1
isogenic
biosample_type!
tissue
organ_slims!
embryo
Showing 5 of 5 results
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Experiment
DSR024UHG
released
FAIRE-seq
of endothelial cell of umbilical vein
Homo sapiens
endothelial cell of umbilical vein newborn
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR520547
released
GRO-seq
of Posterior foregut
Homo sapiens
Posterior foregut
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR641241
released
GRO-seq
of primitive gut cell
Homo sapiens
primitive gut cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR626869
released
GRO-seq
of definitive endodermal cell
Homo sapiens
definitive endodermal cell
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR770475
released
GRO-seq
of hESC
Homo sapiens
hESC (embryoid body cell)
Lab:
AMP-T2D consortium
Project:
AMP