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Citing CMDGA
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Assay category
2
3D chromatin structure
1
DNA accessibility
Assay
292
total RNA-seq
71
ChIP-seq
68
ATAC-seq
7
snATAC-seq
6
single cell RNA-seq
4
MeRIP-seq
4
pCHi-C
2
Hi-C
1
DNase-seq
1
FAIRE-seq
1
RRBS
Project
3
AMP
RFA
2
AMP
1
AMP2
Experiment status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Organ
3
pancreas
Life stage
2
adult
1
unknown
Available data
2
bedpe bed3+
2
hic
1
bam
1
bed narrowPeak
bedpe
1
bigBed narrowPeak
1
bigWig
1
fastq
Platform
1
Illumina Genome Analyzer I
Run type
1
single-ended
Read length (nt)
1
35
Library made from
3
DNA
Date released
1
August, 2017
1
August, 2021
1
November, 2019
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
Replication type
2
unreplicated
1
anisogenic
assay_title!
STARR-seq
assay_title!!
STARR-seq
files.file_type!
bedpe
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Experiment
DSR942HZR
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (56 years) and female adult (59 years) and male adult (53 years)
Lab:
Bing Ren, UCSD
Project:
AMP
Experiment
DSR951IJE
released
Hi-C
of islet of Langerhans
Homo sapiens
islet of Langerhans female adult (43 years)
Lab:
AMP-T2D consortium
Project:
AMP
Experiment
TSTSR121227
released
FAIRE-seq
of islet of Langerhans
Homo sapiens
islet of Langerhans male (53 years)
Lab:
AMP-T2D consortium
Project:
AMP